PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.33AAN
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 178aa    MW: 19801.5 Da    PI: 7.736
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.33AANgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-1744133183
                  EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                  f+k+lt sd++++g +++p++ ae++        +++++  ++l+ +d++ ++ ++ +iyr+++++++lt+GW+ Fv+ ++L +gD+v+F 
  Araip.33AAN  44 FCKQLTASDTSAHGGFSVPRRVAEKIfppllsdySIQPPV-QELVARDLHDNVLTFCHIYRGQPKHHLLTTGWSLFVSGKRLFAGDSVLFI 133
                  99******************************98555554.49***********************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-3433164IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.9E-2836139IPR015300DNA-binding pseudobarrel domain
CDDcd100173.09E-1443132No hitNo description
PfamPF023625.4E-1544133IPR003340B3 DNA binding domain
SMARTSM010191.3E-944147IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MQFGFELGEF HTFNVDYVSN MYDKEALLRL DLALKSNKAQ PEFFCKQLTA SDTSAHGGFS  60
VPRRVAEKIF PPLLSDYSIQ PPVQELVARD LHDNVLTFCH IYRGQPKHHL LTTGWSLFVS  120
GKRLFAGDSV LFIQRANRQP ANISSSVLSS DSMHIGILAA AAHAAANNSP FTIFYNPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-6434177148300Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203852.12e-78PREDICTED: LOW QUALITY PROTEIN: auxin response factor 19-like
SwissprotQ0D9R71e-69ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A151T2S34e-74A0A151T2S3_CAJCA; Auxin response factor 5
STRINGGLYMA07G15640.16e-72(Glycine max)
STRINGGSMUA_Achr9P14090_0013e-72(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.14e-64auxin response factor 19